PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G437300.2.p
Common NameSb01g041130, SORBIDRAFT_01g041130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 246aa    MW: 25349.7 Da    PI: 8.4046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G437300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-40391391100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ 
  Sobic.001G437300.2.p  39 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVV 127
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l+ael +l+++
  Sobic.001G437300.2.p 128 NLQAELTYLQAH 139
                           *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04638140IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3939137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSAGGGTSTL GGGGPSGSGA SGGPGPGGSG GGGGGGGGPC GACKFLRRKC VSGCIFAPYF  60
DSEQGAAHFA AVHKVFGASN VSKLLLQIPA HKRLDAVVTI CYEAQARLRD PVYGCVAHIF  120
ALQQQVVNLQ AELTYLQAHL ATLELPSPPP LPAPPQMPLP GAFSISDLPS STSVPTTVDL  180
SALFDPPPQQ PQWAVQAAQP HHHHHHHQQP QQQQHHQLRQ PAPYGAPVRP GGVKLEQPPP  240
PPHSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0361800.0BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465559.11e-167hypothetical protein SORBIDRAFT_01g041130
SwissprotO221319e-70LBD18_ARATH; LOB domain-containing protein 18
TrEMBLC5WQY61e-167C5WQY6_SORBI; Putative uncharacterized protein Sb01g041130
STRINGSb01g041130.11e-167(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-65LOB domain-containing protein 18