PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G437300.2.p

Common Name

Sb01g041130, SORBIDRAFT_01g041130

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 246aa MW: 25349.7 Da PI: 8.4046

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G437300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.6e-40	39	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ Sobic.001G437300.2.p 39 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVV 127 7*********************9989********************************************************* PP DUF260 89 qlkaelallkee 100 +l+ael +l+++ Sobic.001G437300.2.p 128 NLQAELTYLQAH 139 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.046	38	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	39	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSAGGGTSTL GGGGPSGSGA SGGPGPGGSG GGGGGGGGPC GACKFLRRKC VSGCIFAPYF 60 DSEQGAAHFA AVHKVFGASN VSKLLLQIPA HKRLDAVVTI CYEAQARLRD PVYGCVAHIF 120 ALQQQVVNLQ AELTYLQAHL ATLELPSPPP LPAPPQMPLP GAFSISDLPS STSVPTTVDL 180 SALFDPPPQQ PQWAVQAAQP HHHHHHHQQP QQQQHHQLRQ PAPYGAPVRP GGVKLEQPPP 240 PPHSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036180	0.0	BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465559.1	1e-167	hypothetical protein SORBIDRAFT_01g041130
Swissprot	O22131	9e-70	LBD18_ARATH; LOB domain-containing protein 18
TrEMBL	C5WQY6	1e-167	C5WQY6_SORBI; Putative uncharacterized protein Sb01g041130
STRING	Sb01g041130.1	1e-167	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	6e-65	LOB domain-containing protein 18

Link Out ? help Back to Top
Phytozome	Sobic.001G437300.2.p
Entrez Gene	8054343